Resistome Identification from Whole Genome Sequencing Data of Norwegian Isolates

Masters in Applied and Commercial Biotechnology. Inland Norway University of Applied Sciences. Faculty of Applied Ecology, Agricultural sciences and BiotechnologyAntimicrobial resistance (AMR) is considered a potential threat to global health. Norway have had a low prevalence of resistant bacteria. But in the recent years there has been an increase in resistant bacteria including, Escherichia coli, Klebsiella pneumoniae and Acinetobacter baumannii. Traditionally, clinical microbiology has used culture-based techniques to determine antimicrobial susceptibility and resistance profiles, but now whole–genome sequencing for antibiotic susceptibility (WGS-AST) has emerged as a potential alternative. We aimed to investigate the prevalence of antimicrobial resistance genes and plasmids in WGS of 111 clinical Norwegian isolates of E. coli, K. pneumoniae, and A. baumannii, to identify correlations between phenotypic and genotypic resistance in the isolates, which are related to antibiotic resistance to β-lactam, aminoglycosides, fluoroquinolone, trimethoprim, tetracycline, and phenicol. The most occurring drug class was β-lactam antibiotic with TEM (38%) in E.coli, SHV (67%) in K. pneumoniae, and OXA (100%) and TEM (45%) gene families in A. baumannii. In silico detection of plasmids with Brooks et al database showed plasmid p2_000837 as prominent plasmid 12% E.coli isolates. There were four plasmids (pIB_NDM_1, p2_W5-6, pCHL5009T-102k-mcr3, pVir_020022) in 2% K. pneumoniae isolates which were also shared with E. coli. Only one plasmid (pHZ23-1-1) was confirmed in 9% of A. baumannii isolates. PLSDB detected Plasmid A and plasmid 4 with the maximum percentage in E.coli (10%) and K. pneumoniae isolates (4%). In E. coli and K. pneumoniae, the presence of incompatibility groups was observed; IncFIB (64% and 27%), Col156 (74% and 27%), IncFII (43% and 15%), while IncHI-1B(pNDM-MAR) (12%) were present only in K. pneumoniae . A total of 75 isolates had resistance to the tested β-lactam antibiotics, out of which 63 had the corresponding resistance genes (ampC, SHV, CTX-M, TEM, LEN, OXA). Only 11 E.coli and one K. pneumoniae isolates were found to have resistance genes and the plasmids on the same node to confirm plasmid mediated resistance. This study demonstrates the utility of WGS in defining resistance elements and highlights the diversity of resistance within the selected isolates to further the diagnostics and therapeutics for the treatment of the relevant infections

Nurse teachers’ conceptions and practices of written feedback in Karachi.

Background: Written Feedback (WFB) plays a significant role in student’s learning in terms of improvement of their academic writing skills. However, the quality of WFB may be affected by various personal and contextual factors. This study aimed to identify nurse teachers’ conceptions and practices of WFB on written assignments in nursing degree offering institutions in Karachi, Pakistan. Methods: A cross-sectional descriptive study design was used to answer the study questions. The study was conducted at 11 nursing schools in Karachi by recruiting those teachers who were teaching in nursing degree programs. The sample size of the study consists of 80 teachers. Universal sampling technique was used to select the subjects of the study. Results: The study result consists of demographic information of the participants, teachers’ conceptions and their practices of WFB. Although majority (92%) of the teachers believed that WFB is important for students’ learning, they acknowledged that they were not able to provide WFB at optimum level to their students. This gap in practice is attributed to various personal, contextual, and organizational factors; among them, the highest reported factors were teachers’ lack of training for provision of WFB (84%), distraction in the environment (78%), and constraints of time due to teacher’s workload (74%). Conclusions: The importance of WFB for students’ learning is well established in the literature. However, the preparation of teachers and an enabling environment to facilitate teachers for optimum practices of WFB needs considerable attention by educational institutions

Light-Based Anti-Biofilm and Antibacterial Strategies

Biofilm formation and antimicrobial resistance pose significant challenges not only in clinical settings (i.e., implant-associated infections, endocarditis, and urinary tract infections) but also in industrial settings and in the environment, where the spreading of antibiotic-resistant bacteria is on the rise. Indeed, developing effective strategies to prevent biofilm formation and treat infections will be one of the major global challenges in the next few years. As traditional pharmacological treatments are becoming inadequate to curb this problem, a constant commitment to the exploration of novel therapeutic strategies is necessary. Light-triggered therapies have emerged as promising alternatives to traditional approaches due to their non-invasive nature, precise spatial and temporal control, and potential multifunctional properties. Here, we provide a comprehensive overview of the different biofilm formation stages and the molecular mechanism of biofilm disruption, with a major focus on the quorum sensing machinery. Moreover, we highlight the principal guidelines for the development of light-responsive materials and photosensitive compounds. The synergistic effects of combining light-triggered therapies with conventional treatments are also discussed. Through elegant molecular and material design solutions, remarkable results have been achieved in the fight against biofilm formation and antibacterial resistance. However, further research and development in this field are essential to optimize therapeutic strategies and translate them into clinical and industrial applications, ultimately addressing the global challenges posed by biofilm and antimicrobial resistance

Gut microbiome dysbiosis and correlation with blood biomarkers in active-tuberculosis in endemic setting.

Tuberculosis (TB) is the largest infectious disease with 10 million new active-TB patients and1.7 million deaths per year. Active-TB is an inflammatory disease and is increasingly viewed as an imbalance of immune responses to M. tb. infection. The mechanisms of a switch from latent infection to active disease is not well worked out but a shift in the immune responses is thought to be responsible. Increasingly, the role of gut microbiota has been described as a major influencer of the immune system. And because the gut is the largest immune organ, we aimed to analyze the gut microbiome in active-TB patients in a TB-endemic country, Pakistan. The study revealed that Ruminococcacea, Enetrobactericeae, Erysipelotrichaceae, Bifidobacterium, etc. were the major genera associated with active-TB, also associated with chronic inflammatory disease. Plasma antibody profiles against several M. tb. antigens, as specific biomarkers for active-TB, correlated closely with the patient gut microbial profiles. Besides, bcoA gene copy number, indicative of the level of butyrate production by the gut microbiome was five-fold lower in TB patients compared to healthy individuals. These findings suggest that gut health in TB patients is compromised, with implications for disease morbidity (e.g., severe weight loss) as well as immune impairment

Flaxseed (Linum usitatissimum); phytochemistry, pharmacological characteristics and functional food applications

Flaxseed (Linum usitatissimum) from the family Linaceae, is a valuable medicinal oil seed crop cultivated all around the world. Presence of proteins, dietary fiber, fatty acids, especially α-linolenic acid, vitamins, minerals, phenolics, flavonoids and other bioactive components in significant amounts, enhances medicinal, pharma food and commercial value of flaxseed. It has been added in a variety of bakery items, beverages and dairy products. Moreover, consumption of flaxseed upsurge due to its risk lowering ability of numerous degenerative (diabetes, obesity) and chronic disorders (cardiovascular diseases and cancer). Flaxseed also has prebiotic properties and improve the health of gut microbiota. Additionally, flaxseed also contains several antinutrients such as phytic acid, protease inhibitors, and cyanogenic glycosides, which can limit the bioavailability of certain essential nutrients and can reduce nutritional value. Flaxseed meal interactions, dosage and supplementations have also been discussed. The focus of the current review is on recent studies on humans and animals as well as flaxseed's commercial use in a variety of food products as proof of its phytochemical content and potential health benefits

Gut microbiome dysbiosis and correlation with blood biomarkers in active-tuberculosis in endemic setting.

Tuberculosis (TB) is the largest infectious disease with 10 million new active-TB patients and1.7 million deaths per year. Active-TB is an inflammatory disease and is increasingly viewed as an imbalance of immune responses to M. tb. infection. The mechanisms of a switch from latent infection to active disease is not well worked out but a shift in the immune responses is thought to be responsible. Increasingly, the role of gut microbiota has been described as a major influencer of the immune system. And because the gut is the largest immune organ, we aimed to analyze the gut microbiome in active-TB patients in a TB-endemic country, Pakistan. The study revealed that Ruminococcacea, Enetrobactericeae, Erysipelotrichaceae, Bifidobacterium, etc. were the major genera associated with active-TB, also associated with chronic inflammatory disease. Plasma antibody profiles against several M. tb. antigens, as specific biomarkers for active-TB, correlated closely with the patient gut microbial profiles. Besides, bcoA gene copy number, indicative of the level of butyrate production by the gut microbiome was five-fold lower in TB patients compared to healthy individuals. These findings suggest that gut health in TB patients is compromised, with implications for disease morbidity (e.g., severe weight loss) as well as immune impairment